At least two characters are Commanders: Crow Gideon and Phineas Kidd.

Examples of Phineas using Commanding: here and here.

The first to talk about Commanding in the comic is Hazard: p.182

Phineas commanding

Phineas memories about Commanding (probably Crow Gideon talking): p.230 and further.

Also, Phineas talking to Ulrich: p.263

and p.344

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